STRINGSTRING
phlH phlH phlG phlG phlF phlF phlE phlE pltJ pltJ phlA phlA phlD phlD phlC phlC phlB phlB pltI pltI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phlH2,4-diacetylphloroglucinol biosynthesis regulator PhlH; Previously identified and sequenced. See Schnider-Keel et al 2000 (PMID: 10671440) for more information; identified by similarity to GB:AAF20930.1; match to protein family HMM PF00440; match to protein family HMM PF09209. (223 aa)    
Predicted Functional Partners:
phlG
2,4-diacetylphloroglucinol specific hydrolase PhlG; Previously identified and sequenced. See Bottiglieri and Keel 2006 (PMID: 16391073) for more information; identified by similarity to GB:AAF20929.2.
     
 0.791
phlF
Transcriptional repressor PhlF; Previously identified and sequenced. See Schnider-Keel et al 2000 (PMID: 10671440) for more information; identified by similarity to GB:AAF20928.1; match to protein family HMM PF00440.
  
   
 0.626
phlE
Putative permease PhlE; Identified by similarity to GB:CAD65845.1; match to protein family HMM PF07690.
      
 0.577
pltJ
ABC transporter, ATP binding/permease protein PltJ; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) called pltI in Pseudomonas sp. M18 (PMID: 16581203); identified by similarity to GB:AAY59067.1; match to protein family HMM PF00005.
 
   
 0.542
phlA
2,4-diacetylphloroglucinol biosynthesis protein PhlA; Previously identified and sequenced. See Schnider-Keel et al 2000 (PMID: 10671440) for more information; identified by similarity to GB:AAF20927.1; match to protein family HMM PF08541.
      
 0.534
phlD
Type III polyketide synthase PhlD; Identified by match to protein family HMM PF00195; match to protein family HMM PF02797; match to protein family HMM PF08541.
      
 0.531
phlC
2,4-diacetylphloroglucinol biosynthesis protein PhlC; Identified by similarity to GB:AAB48108.1.
      
 0.530
phlB
2,4-diacetylphloroglucinol biosynthesis protein PhlB; Identified by similarity to GB:AAB48107.1; match to protein family HMM PF01796.
      
 0.530
pltI
Putative membrane fusion protein; Previously identified and sequenced (PMID 16269724; Brodhagen et al., 2005) called pltH in Pseudomonas sp. M18 (PMID 16269724); identified by similarity to GB:AAY59066.1; match to protein family HMM PF00529.
 
   
 0.521
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.